Methylomirabilaceae

Methylomirabilaceae
Scientific classification
Domain: Bacteria
Kingdom: incertae sedis
Phylum: Methylomirabilota
Class: Methylomirabilia
Order: Methylomirabilales
Family: Methylomirabilaceae
Chuvochina et al. 2023[1]
Genus
  • "Ca. Methylomirabilis"

Methylomirabilaceae is a family of bacteria,[2] represented by type genus Ca. Methylomirabilis. Represented most famously by the novel methane-oxidizing bacterium Ca. Methylomirabilis oxyfera,[3] which appears to split oxygen from nitrates, it contains several other genera not yet described.

SILVA 138.1[3][4] lists 6 uncultured genera currently within the family:

  • Candidatus Methylomirabilis
  • MIZ14
  • MIZ17
  • SH765B-TzT-35
  • wb1-A12
  • Z114MB74

These genera are consistently described in methane-rich environments,[5][6][7] but only species within Candidatus Methylomirabilis are confidently described as methane-oxidizers.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI).[8]

120 marker proteins based GTDB 10-RS226[9][10][11]
"Ca. Methylomirabilis"

"Ca. M. limnetica" Graf et al. 2018

"Ca. M. tolerans" Dalcin Martins et al. 2022

"Ca. M. lanthanidiphila" Versantvoort et al. 2018

"Ca. M. oxygeniifera" Ettwig et al. 2010 corrig. Oren 2017

Unassigned species of "Ca. Methylomirabilis":

  • "Ca. M. iodofontis" Zhu et al. 2022
  • "Ca. M. nitratireducens" Li et al. 2023
  • "Ca. M. sinica" He et al. 2016

See also

References

  1. ^ Léa Cabrol et al: Anaerobic oxidation of methane and associated microbiome in anoxic water of Northwestern Siberian lakes. In: Science of the Total Environment Volume 736, 20 September 2020, 139588, doi:10.1016/j.scitotenv.2020.139588. Section 3.3
  2. ^ a b Methylomirabilaceae in LPSN; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research. 53: D1–D12. doi:10.1093/nar/gkaf1110.
  3. ^ a b Ettwig, Katharina F.; Butler, Margaret K.; Le Paslier, Denis; Pelletier, Eric; Mangenot, Sophie; Kuypers, Marcel M. M.; Schreiber, Frank; Dutilh, Bas E.; Zedelius, Johannes; de Beer, Dirk; Gloerich, Jolein; Wessels, Hans J. C. T.; van Alen, Theo; Luesken, Francisca; Wu, Ming L. (March 2010). "Nitrite-driven anaerobic methane oxidation by oxygenic bacteria" (PDF). Nature. 464 (7288): 543–548. Bibcode:2010Natur.464..543E. doi:10.1038/nature08883. ISSN 0028-0836. PMID 20336137. S2CID 205220000.
  4. ^ "silva rRNA database Browser". SILVA rRNA database. Retrieved 2024-02-23.
  5. ^ Jiang, Lei; Chu, Yi-Xuan; Zhang, Xuan; Wang, Jing; He, Xiaosong; Liu, Chen-Yang; Chen, Ting; He, Ruo (November 2022). "Characterization of anaerobic oxidation of methane and microbial community in landfills with aeration". Environmental Research. 214 (Pt 3) 114102. Bibcode:2022ER....21414102J. doi:10.1016/j.envres.2022.114102. ISSN 0013-9351. PMID 35973464. S2CID 251561584 – via Elsevier Science Direct.
  6. ^ van Grinsven, Sigrid; Meier, Dimitri V.; Michel, Anja; Han, Xingguo; Schubert, Carsten J.; Lever, Mark A. (2022). "Redox Zone and Trophic State as Drivers of Methane-Oxidizing Bacterial Abundance and Community Structure in Lake Sediments". Frontiers in Environmental Science. 10. Bibcode:2022FrEnS..1057358V. doi:10.3389/fenvs.2022.857358. hdl:20.500.11850/536706. ISSN 2296-665X.
  7. ^ Yang, Sizhong; Anthony, Sara E.; Jenrich, Maren; in 't Zandt, Michiel H.; Strauss, Jens; Overduin, Pier Paul; Grosse, Guido; Angelopoulos, Michael; Biskaborn, Boris K.; Grigoriev, Mikhail N.; Wagner, Dirk; Knoblauch, Christian; Jaeschke, Andrea; Rethemeyer, Janet; Kallmeyer, Jens (2023-03-13). "Microbial methane cycling in sediments of Arctic thermokarst lagoons". Global Change Biology. 29 (10): 2714–2731. Bibcode:2023GCBio..29.2714Y. doi:10.1111/gcb.16649. hdl:2066/292690. ISSN 1354-1013. PMID 36811358.
  8. ^ Schoch CL; et al. "Methylomirabilaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-06-05.
  9. ^ "GTDB release 10-RS226". Genome Taxonomy Database. Retrieved 1 May 2025.
  10. ^ "bac120_r226.sp_label". Genome Taxonomy Database. Retrieved 1 May 2025.
  11. ^ "Taxon History". Genome Taxonomy Database. Retrieved 1 May 2025.


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