Holophagae

Holophagae
Scientific classification
Domain: Bacteria
Kingdom: Pseudomonadati
Phylum: Acidobacteriota
Class: Holophagae
Fukunaga et al. 2008[1]
Type genus
Holophaga
Liesack et al. 1995
Orders[2]
Synonyms
  • "Holophagia" Oren, Parte & Garrity 2016

Holophagae is a class of Acidobacteriota.[1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature[2] and National Center for Biotechnology Information (NCBI).[3] Numbered orders do not yet have any cultured representatives.

16S rRNA based phylogeny[4] 16S rRNA based LTP_10_2024[5][6][7] 120 marker proteins based GTDB 10-RS226[8][9][10]

See also

References

  1. ^ a b Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008). "Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum "Acidobacteria"". Int J Syst Evol Microbiol. 58 (Pt 11): 2597–2601. doi:10.1099/ijs.0.65589-0. PMID 18984699.
  2. ^ a b Holophagae in LPSN; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research. 53: D1–D12. doi:10.1093/nar/gkaf1110.
  3. ^ Schoch CL; et al. "Holophagae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-06-05.
  4. ^ Dedysh SN, Yilmaz P. (2018). "Refining the taxonomic structure of the phylum Acidobacteria". Int J Syst Evol Microbiol. 68 (12): 3796–3806. doi:10.1099/ijsem.0.003062. PMID 30325293. S2CID 53502177.
  5. ^ "The LTP". Retrieved 10 December 2024.
  6. ^ "LTP_all tree in newick format". Retrieved 10 December 2024.
  7. ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  8. ^ "GTDB release 10-RS226". Genome Taxonomy Database. Retrieved 1 May 2025.
  9. ^ "bac120_r226.sp_label". Genome Taxonomy Database. Retrieved 1 May 2025.
  10. ^ "Taxon History". Genome Taxonomy Database. Retrieved 1 May 2025.
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