Immigrans-tripunctata radiation
| 'Immigrans-tripunctata radiation | |
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| Drosophila innubila of the Drosophila quinaria species group | |
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The immigrans-tripunctata radiation is a speciose lineage of Drosophila flies, including over 300 species.[1] The immigrans-tripunctata radiation is a sister lineage to most other members of the subgenus Drosophila.[2] A number of species have had their genomes or transcriptomes sequenced for evolutionary studies using Drosophila.
Species groups
The following species groups and numbers largely derive from O'Grady (2018).[2]
- Immigrans species group (106 species)[2]
- Tripunctata species group (83 species)[2]
- Quinaria species group (35 species)[1][2]
- Guarani species group (24 species)[3][4]
- Cardini species group (16 species)[2]
- Calloptera species group (8 species)[2]
- Bizonata species group (7 species)[2]
- Funebris species group (7 species)[2]
- Testacea species group (4 species)[2]
Sequenced genomes or transcriptomes
The following species have extensive genetic sequence data available as of August 2019.
Quinaria species group
Immigrans species group
Testacea species group
Work published in 2021 and 2024 has greatly expanded the coverage of genomes in this group with 18 new genomes in 2024. The 2024 work presents the first genomes for the tripunctata, testacea, and funebris groups.[10]: (Fig.1)
Gallery
References
- ^ a b Hanson MA, Hamilton PT, Perlman SJ (October 2016). "Immune genes and divergent antimicrobial peptides in flies of the subgenus Drosophila". BMC Evolutionary Biology. 16 (1): 228. doi:10.1186/s12862-016-0805-y. PMC 5078906. PMID 27776480.
- ^ a b c d e f g h i j o'Grady, Patrick M.; Desalle, Rob (2018). "Phylogeny of the Genus Drosophila". Genetics. 209 (1): 1–25. doi:10.1534/genetics.117.300583. PMC 5937177. PMID 29716983.
- ^ Peñafiel-Vinueza, Ana Danitza; Rafael, Violeta (2018). "Five new species of Drosophila guarani group from the Andes of southern Ecuador (Diptera, Drosophilidae)". ZooKeys (781): 141–163. doi:10.3897/zookeys.781.22841. PMC 6160839. PMID 30271239.
- ^ "FlyBase phylogeny". Retrieved 24 August 2019.
- ^ Koshikawa, Shigeyuki; Giorgianni, Matt W.; Vaccaro, Kathy; Kassner, Victoria A.; Yoder, John H.; Werner, Thomas; Carroll, Sean B. (2015). "Gain of cis-regulatory activities underlies novel domains of wingless gene expression in Drosophila". Proceedings of the National Academy of Sciences. 112 (24): 7524–9. Bibcode:2015PNAS..112.7524K. doi:10.1073/pnas.1509022112. PMC 4475944. PMID 26034272.
- ^ a b c Hill, T.; Koseva, B. S.; Unckless, R. L. (2019). "genome of Drosophila innubila reveals lineage-specific patterns of selection in immune genes | Molecular Biology and Evolution | Oxford Academic". Molecular Biology and Evolution. 36 (7): 1405–1417. doi:10.1093/molbev/msz059. PMC 6573480. PMID 30865231.
- ^ Zhou, Qi; Zhu, Hong-mei; Huang, Quan-fei; Xuan, Zhao-lin; Zhang, Guo-jie; Zhao, Li; Ding, Yun; Roy, Scott; Vicoso, Beatriz; Ruan, Jue; Zhang, Yue; Zhao, Ruo-Ping; Mu, Bo; Min, Jiu-Meng; Zhang, Qing-hui; Li, Jian-wen; Luo, Yin-Ling; Liang, Zu-Heng; Ye, Chen; Li, Rui-Qiang; Zhang, Xiu-Qing; Wang, Jun; Wang, Wen; Bachtrog, Doris (2012). "Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans". BMC Genomics. 13: 109. doi:10.1186/1471-2164-13-109. PMC 3353239. PMID 22439699.
- ^ Vicoso, Beatriz; Bachtrog, Doris (2015). "Numerous Transitions of Sex Chromosomes in Diptera". PLOS Biology. 13 (4) e1002078. doi:10.1371/journal.pbio.1002078. PMC 4400102. PMID 25879221.
- ^ Hamilton, P. T.; Leong, J. S.; Koop, B. F.; Perlman, S. J. (2014). "Transcriptional responses in a Drosophila defensive symbiosis - Hamilton - 2014 - Molecular Ecology". Molecular Ecology. 23 (6): 1558–70. doi:10.1111/mec.12603. PMID 24274471. S2CID 2964885.
- ^ Kim, BY; Gellert, HR; Church, SH; Suvorov, A; Anderson, SS; Barmina, O; Beskid, SG; Comeault, AA; Crown, KN; Diamond, SE; Dorus, S; Fujichika, T; Hemker, JA; Hrcek, J; Kankare, M; Katoh, T; Magnacca, KN; Martin, RA; Matsunaga, T; Medeiros, MJ; Miller, DE; Pitnick, S; Schiffer, M; Simoni, S; Steenwinkel, TE; Syed, ZA; Takahashi, A; Wei, KH; Yokoyama, T; Eisen, MB; Kopp, A; Matute, D; Obbard, DJ; O'Grady, PM; Price, DK; Toda, MJ; Werner, T; Petrov, DA (July 2024). "Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life". PLoS biology. 22 (7) e3002697. doi:10.1371/journal.pbio.3002697. PMID 39024225.